SELECTED PUBLICATIONS (Chronological; click on authors to download)

• Popp, TE, S Hermet, J Fredette-Rman, E McKeel, W Zozaya, C Baumlin, G Charmentier, CE Lee*, C Lorin-Nebel*. 2024. Evolution of ion transporter Na⁺/K⁺-ATPase expression in the osmoregulatory maxillary glands of an invasive copepod. iScience. 27:110278. doi: 10.1016/j.isci.2024.110278 (*Co-corresponding authors)
  
  
• Lee, CE. 2023. Genome architecture underlying salinity adaptation in the invasive copepod Eurytemora affinis species complex: A review. iScience. 26:107851. doi: 10.1016/j.isci.2023.107851 (Invited)
  
  
• Lee, CE, G Charmantier, C Lorin-Nebel. 2022. Mechanisms of Na⁺ uptake from freshwater habitats in animals. Frontiers in Physiology. 13:1006113. doi: 10.3389/fphys.2022.1006113 (Invited)
  
  
• Lee, CE, K Downey, RS Colby, CA Freire, S Nichols, MN Burgess, KJ Judy. 2022. Recognizing salinity threats in the climate crisis. Integrative and Comparative Biology. 62:441-460. doi: 10.1093/icb/icac069 (Invited)
  
  
• Stern DB, NW Anderson, JA Diaz, CE Lee. 2022. Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod. Nature Communications. 13:4024. doi: 10.1038/s41467-022-31622-8
  
  
• Lee CE. 2021. Ion transporter gene families as physiological targets of natural selection during salinity transitions in a copepod. Physiology. 36:335-349. doi: 10.1152/physiol.00009.2021 (Invited)
  
  
• Posavi M, D Gulisija, JB Munro, JC Silva, CE Lee. 2020. Rapid evolution of genome-wide expression and plasticity during saline to freshwater invasions by a copepod. Molecular Ecology. 29:4835-4856. doi: 10.1111/mec.15681
  
  
• Stern DB, CE Lee. 2020. Evolutionary origins of genomic adaptations in an invasive copepod. Nature Ecology & Evolution. 4:1084-1094. doi: 10.1038/s41559-020-1201-y  Supplementary Tables
  
  
• Thomas GWC, E Dohmen, DST Hughes et al. 2020. Gene content evolution in arthropods. Genome Biology. 21:15.
  
  
• Poynton H, S Hasenbein, J Benoit, et al. 2018. The Toxicogenome of Hyalella azteca: a model for sediment ecotoxicology and evolutionary toxicology. Environmental Science & Technology. 52:6009-6022. doi: 10.1021/acs.est.8b00837
  
  
• Lee CE, JL Remfert, T Opgenorth, KM Lee, E. Stanford, JW Connolly, JW Kim, S Tomke. 2017. Evolutionary response to crude oil from the Deepwater Horizon Oil Spill by the copepod Eurytemora affinis. Evolutionary Applications. 10:813-828. (Invited for Special Issue on Evolutionary Toxicology)
  
  
• Eyun S, HY Soh, M Posavi, J Munro... ...JC Silva, RA Gibbs, S Richards, and CE Lee. 2017. Evolutionary history of chemosensory-related gene families across the Arthropoda. Molecular Biology and Evolution. 34:1838-1862.
  
  
• Lee CE. 2016. Evolutionary mechanisms of habitat invasions, using the copepod Eurytemora affinis as a model system. Evolutionary Applications. 9:248-270. (Invited paper for Special Issue)
  
  
• Gerber L, CE Lee, E Grousset, E Blondeau-Bidet, NB Boucheker, C Lorin-Nebel, M Charmantier-Daures, G Charmantier.  2016. The Legs Have It: Localizing and quantifying expression of ion transporters V-Type H+ ATPase and Na+/K+-ATPase in the swimming legs of the freshwater invading copepod Eurytemora affinis. Physiological and Biochemical Zoology. 89:233-250.
  
  
• Posavi M, GW Gelembiuk, B Larget, CE Lee.  2014. Testing for beneficial reversal of dominance during salinity shifts in the invasive copepod Eurytemora affinis, and implications for the maintenance of genetic variation. Evolution. 68:3166-3183.
  
  
• Johnson KE, L Perreau, G Charmantier, M Charmantier-Daures, CE Lee.  2014. Without Gills: Exploring the localization of osmoregulatory function in the copepod Eurytemora affinis. Physiological and Biochemical Zoology. 87:310-324.
  
  
• Lee CE, W Moss, N Olson, KF Chau, YM Chang, K Johnson.  2013. Feasting in fresh water: Impacts of food concentration on freshwater tolerance and the evolution of food x salinity response during the expansion from saline into freshwater habitats. Evolutionary Applications. 6:673-689.
  
  
• Metzger B, GW Gelembiuk, CE Lee.  2013. Direct sequencing of haplotypes from diploid individuals through a modified emulsion PCR-based single-molecule sequencing approach. Molecular Ecology Resources. 13:135-143.
  
  
• Lee CE, M Posavi, G Charmantier. 2012. Rapid evolution of body fluid regulation following independent invasions into freshwater habitats. Journal of Evolutionary Biology. 25:625-633.
  
  
• Hufbauer RA, B Facon, V Ravigné, J Turgeon, J Foucaud, CE Lee, O Rey, A Estoup.  2012.  Anthropogenically-Induced Adaptation to Invade (AIAI): Contemporary adaptation to human-altered habitats within the native range can promote invasions. Evolutionary Applications. 5:89-101.
  
  
• Lee CE, M Kiergaard, BD Eads, GW Gelembiuk, M Posavi.  2011.  Pumping ions: Rapid parallel evolution of ionic regulation following habitat invasions. Evolution. 65:2229-2244.
  
  
• Bron JE, D Frisch, E Goetze, SC Johnson, CE Lee, GA Wyngaard.  2011.  Observing copepods through a genomic lens. Frontiers in Zoology. 8:22.
  
  
• Lee CE.  2011.  Evolution of invasive populations. In Encyclopedia of Biological Invasions. Eds. Daniel Simberloff and Marcel Rejmánek. University of California Press. pp. 215-222.
  
  
• Peyer SM, JC Hermanson, CE Lee.  2011.  Effects of shell morphology on mechanics of zebra and quagga mussel locomotion. Journal of Experimental Biology. 214:2226-2236.
  
  
• Peyer SM, JC Hermanson, CE Lee.  2010.  Developmental plasticity of shell morphology in quagga mussels from shallow and deep water habitats of the Great Lakes. Journal of Experimental Biology. 213:2602-2609.
  
  
• Dodson SI, DA Skelly, CE Lee.  2010.  Out of Alaska:  Morphological diversity within the genus Eurytemora from its ancestral range (Crustacea, Copepoda). Hydrobiologia. 653:131-148. (Invited for special issue: Fifty Years After the "Homage to Santa Rosalia": Old and New Paradigms on Biodiversity in Aquatic Ecosystems)
  
  
• Schierenbeck KA, CE Lee, RD Holt.  2010.  Synthesizing Ecology and Evolution for the Study of Invasive Species. Evolutionary Applications. Volume 3.
  
  
• Peyer SM, AJ McCarthy, CE Lee. 2009. Zebra mussels anchor faster and tighter than quagga mussels in flow. Journal of Experimental Biology. 212:2027-2036.

See news article in ScienceDaily.com: "Zebra Mussels Hang On While Quagga Mussels Take Over."


• Lee, CE, GW Gelembiuk.  2008.  Evolutionary origins of invasive populations.  Evolutionary Applications. 1:427-448.
  
  
• Winkler, G, JJ Dodson, CE Lee.  2008.  Heterogeneity within the native range: Population genetic analyses of sympatric invasive and noninvasive clades of the freshwater invading copepod Eurytemora affinis.  Molecular Ecology.  17:415-430.  (Invited for the International Summit on Evolutionary Change in Human-altered Environments)
  
  
• Stillman JH, JK Colbourne, CE Lee, et al.  2008.  Recent advances in crustacean genomics. Integrative and Comparative Biology. 48:852-868.
  
  
• Lee, CE, JL Remfert, YM Chang.  2007.  Response to selection and evolvability of invasive populations. Genetica. 129:179-192.  (Invited for the SSE 2004 symposium on Invasive Species)
  
  
• Gilchrist, GW, CE Lee.  2007.  All stressed out and nowhere to go: does evolvability limit adaptation in invasive species? Genetica. 129:127-132.
  
  
• Lee, CE, GW Gilchrist.  2007.  All Stressed Out and Nowhere To Go:  Does Evolvability Limit Adaptation in Invasive Species? Papers from the Symposium at the SSE/ASN/SSB meeting, June 2004.  Genetica. Volume 129.
  
  
• Gelembiuk, GW, GE May, CE Lee.  2006.  Phylogeography and systematics of zebra mussels and related species. Molecular Ecology.  15:1021-1031.
  
  
• May, GE, GW Gelembiuk, V Panov, M Orlova, CE Lee.  2006.  Molecular ecology of zebra mussel invasions. Molecular Ecology. 15:1033-1050.
  
  
• Lee, CE, T Mitchell-Olds.  2006.  Ecological and evolutionary genomics of populations in nature.  Molecular Ecology.  15:1193-1196.
  
  
• Lee, CE, T Mitchell-Olds.  2006.  Ecological and Evolutionary Genomics of Populations in Nature.  Special Issue for Molecular Ecology. Volume 15.
  
  
• Dodson, SI, CE Lee.  2006.  Recommendations for taxonomic submissions to Hydrobiologia.  Hydrobiologia. 556:1-5.
  
  
• Havel, JE, CE Lee, MJ Vander Zanden.  2005.  Do reservoirs facilitate passive invasions into landscapes? Bioscience. 55:518-525.
  
  
• Piller, KR, CC Wilson, CE Lee, J Lyons.  2005.  Conservation genetics of inland lake trout in Upper Mississippi River Basin: Native or stocked ancestry? Transactions of the American Fisheries Society. 134:789-802.
  
  
• Rasch, EM, CE Lee, GA Wyngaard.  2004.  DNA-feulgen cytophotometric determination of genome size for the freshwater-invading copepod Eurytemora affinis. Genome.  47:559-564.
  
  
• Lee, CE, JL Remfert, GW Gelembiuk.  2003.  Evolution of physiological tolerance and performance during freshwater invasion events. Integrative and Comparative Biology.  43:439-449. (Invited for SICB symposium on Selection on Performance in Nature)
• Lee, CE, CH Petersen.  2003.  Effects of developmental acclimation on adult salinity tolerance in the freshwater-invading Eurytemora affinis. Physiological and Biochemical Zoology.  76:296-301.
• Lee, CE.  2002.  Evolutionary genetics of invasive species. Trends in Ecology and Evolution.  17: 386-391.
  
  
• Lee, CE, CH Petersen.  2002.  Genotype-by-environment interaction for salinity tolerance in the freshwater invading copepod Eurytemora affinis.  Physiological and Biochemical Zoology.  75: 335-344.


• Lee, CE, BW Frost.  2002.  Morphological stasis in the Eurytemora affinis species complex (Copepoda: Temoridae). Hydrobiologia.  480:111-128.  (Invited Symposium Paper)


• Lee, CE.  2002.  A tribute to Professor Bruce W. Frost.  Hydrobiologia.  480:3-4.


• Lee, CE, S Strom, J Yen.  2002.  Progress in Zooplankton Biology: Ecology, Systematics, and Behavior.  Hydrobiologia. Volume 480.


• Lee, CE.  2000.  Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate "populations."  Evolution.  54:2014-2027.


• Lee, CE.  1999.  Rapid and repeated invasions of fresh water by the saltwater copepod Eurytemora affinis.  Evolution.  53:1423-1434.
  
  
• Lee, CE, MA Bell.  1999.  Causes and consequences of recent freshwater invasions by saltwater animals.  Trends in Ecology and Evolution.  14: 284-288.


• Lee, CE , RR Strathmann.  1998.  Scaling of gelatinous clutches:  effects of siblings' competition for oxygen on clutch size and parental investment per offspring. American Naturalist.  151:293-310.


• Gaggiotti, O, CE Lee, G Wardle.  1997.  The effect of overlapping generations and population structure on gene-frequency clines.  In Structured Population Models in Marine, Freshwater and Terrestrial Systems.  H Caswell and S Tuljapurkar (eds.) Chapman & Hall.

SELECTED PUBLICATIONS by Topic (click on author to download pdf files)

Evolutionary Origins of Invasive Populations (in order of preference)

• Lee, CE, GW Gelembiuk.  2008.  Evolutionary origins of invasive populations.  Evolutionary Applications. 1:427-448.
• Lee, CE.  2002.  Evolutionary genetics of invasive species. Trends in Ecology and Evolution.  17: 386-391.
• Lee, CE.  2010.  Evolution of invasive populations.  In The Encyclopedia of Biological Invasions. Eds. Daniel Simberloff and Marcel Rejmánek. University of California Press.
• Lee, CE, MA Bell.  1999.  Causes and consequences of recent freshwater invasions by saltwater animals.  Trends in Ecology and Evolution.  14: 284-288.
• Gilchrist, GW, CE Lee.  2007.  All stressed out and nowhere to go: does evolvability limit adaptation in invasive species? Genetica.  129:127-132.
• Havel, JE, CE Lee, MJ Vander Zanden.  2005.  Do reservoirs facilitate passive invasions into landscapes? Bioscience. 55:518-525.
  
  
• Hufbauer, RA, B Facon, V Ravigné, J Turgeon, J Foucaud, CE Lee, O Rey, A Estoup. 2012. Anthropogenically-Induced Adaptation to Invade (AIAI): Contemporary adaptation to human-altered habitats within the native range can promote invasions. Evolutionary Applications. 5:89-101.

Evolutionary Shifts during Habitat Invasions (Chronological)
(& Evolutionary Genetics of Eurytemora affinis populations)

• Gelembiuk, GW, B Metzger, JC da Silva, CE Lee. 2018. Shifts in copepod microbiome composition across replicated saline to freshwater invasions. Molecular Ecology. In Review.  
  
  
• Gerber, L**, CE Lee, E Grousset, E Blondeau-Bidet, NB Boucheker, C Lorin-Nebel, M Charmantier-Daures, G Charmantier. 2016. The Legs Have It: Localizing and quantifying expression of ion transporters V-Type H+ ATPase and Na+/K+-ATPase in the swimming legs of the freshwater invading copepod Eurytemora affinis. Physiological and Biochemical Zoology. 89:233-250.


• Posavi, M, GW Gelembiuk, B Larget, CE Lee. 2014. Testing for beneficial reversal of dominance during salinity shifts in the invasive copepod Eurytemora affinis, and implications for the maintenance of genetic variation. Evolution. 68:3166-3183.


• Johnson, KE, L Perreau, G Charmantier, M Charmantier-Daures, CE Lee. 2014. Without Gills: Exploring the localization of osmoregulatory function in the copepod Eurytemora affinis. Physiological and Biochemical Zoology. 87:310-324.


• Lee, CE, W Moss, N Olson, KF Chau, YM Chang, K Johnson. 2013. Feasting in fresh water: Impacts of food concentration on freshwater tolerance and the evolution of food x salinity response during the expansion from saline into freshwater habitats. Evolutionary Applications. 6:673–689.


• Metzger, B, GW Gelembiuk, CE Lee. 2013. Direct sequencing of haplotypes from diploid individuals through a modified emulsion PCR-based single-molecule sequencing approach. Molecular Ecology Resources. 13:135-143.


• Lee, CE, M Posavi, G Charmantier.  2012.  Rapid evolution of body fluid regulation following independent invasions into freshwater habitats. Journal of Evolutionary Biology. 25:625-633.
  
  
• Lee, CE, M Kiergaard, BD Eads, GW Gelembiuk, M Posavi.  2011.  Pumping ions: Rapid parallel evolution of ionic regulation following habitat invasions. Evolution. 65:2229-2244.

• Winkler, G, JJ Dodson, CE Lee.  2008.  Heterogeneity within the native range: Population genetic analyses of sympatric invasive and noninvasive clades of the freshwater invading copepod Eurytemora affinis. Molecular Ecology.  17:415-430.
• Lee, CE, JL Remfert, YM Chang.  2007.  Response to selection and evolvability of invasive populations. Genetica.  129:179-192. 
• Lee, CE, JL Remfert, GW Gelembiuk.  2003.  Evolution of physiological tolerance and performance during freshwater invasion events. Integrative and Comparative Biology.  43:439-449.
• Lee, CE, CH Petersen.  2003.  Effects of developmental acclimation on adult salinity tolerance in the freshwater-invading Eurytemora affinis. Physiological and Biochemical Zoology.  76:296-301.
• Lee, CE, CH Petersen.  2002.  Genotype-by-environment interaction for salinity tolerance in the freshwater invading copepod Eurytemora affinis.  Physiological and Biochemical Zoology.  75: 335-344.
• Lee, CE.  1999.  Rapid and repeated invasions of fresh water by the saltwater copepod Eurytemora affinis.  Evolution.  53:1423-1434.

Speciation, Systematics, and Morphological Evolution (Chronological)

• Bron, JE, D Frisch, E Goetze, SC Johnson, CE Lee, GA Wyngaard.  2011. Observing copepods through a genomic lens. Frontiers in Zoology. 8:22.
  
  
• Dodson, SI, DA Skelly, CE Lee.  2010. Out of Alaska:  Morphological evolution and diversity within the genus Eurytemora from its ancestral range (Crustacea, Copepoda). Hydrobiologia. 653:131-148.
• Dodson, SI, CE Lee.  2006. Recommendations for taxonomic submissions to Hydrobiologia. Hydrobiologia. 556:1-5.

• Rasch, EM, CE Lee, GA Wyngaard.  2004. DNA-feulgen cytophotometric determination of genome size for the freshwater-invading copepod Eurytemora affinis. Genome.  47:559-564.
  
  
• Lee, CE, BW Frost.  2002. Morphological stasis in the Eurytemora affinis species complex (Copepoda: Temoridae). Hydrobiologia.  480:111-128.
• Lee, CE.  2000. Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate "populations."  Evolution.  54:2014-2027.

Zebra and Quagga Mussel Invasions (Chronological)

• Peyer, SM, JC Hermanson, CE Lee. 2011. Effects of shell morphology on mechanics of zebra and quagga mussel locomotion. Journal of Experimental Biology. 214:2226-2236.


• Peyer, SM, JC Hermanson, CE Lee. 2010. Developmental plasticity of shell morphology in quagga mussels from shallow and deep water habitats of the Great Lakes. Journal of Experimental Biology. 213:2602-2609.


• Peyer, SM, AJ  McCarthy, CE Lee. 2009. Zebra mussels anchor faster and tighter than quagga mussels in flow. Journal of Experimental Biology. 212:2027-2036. 

See news article in ScienceDaily.com: "Zebra Mussels Hang On While Quagga Mussels Take Over."


• Gelembiuk, GW, GE May, CE Lee. 2006. Phylogeography and systematics of zebra mussels and related species. Molecular Ecology.  15:1021-1031. 
• May, GE, GW Gelembiuk, V Panov, M Orlova, CE Lee. 2006. Molecular ecology of zebra mussel invasions. Molecular Ecology.  15:1033-1050.

Miscellaneous Topics (in order of preference)

• Lee, CE , RR Strathmann. 1998. Scaling of gelatinous clutches:  effects of siblings' competition for oxygen on clutch size and parental investment per offspring. American Naturalist.  151:293-310.
• Lee, CE, T Mitchell-Olds. 2006. Ecological and evolutionary genomics of populations in nature.  Molecular Ecology.  15:1193-1196.
• Piller, KR, CC Wilson, CE Lee, J Lyons. 2005. Conservation genetics of inland lake trout in Upper Mississippi River Basin: Native or stocked ancestry? Transactions of the American Fisheries Society. 134:789-802.
• Gaggiotti, O, CE Lee, G Wardle. 1997. The effect of overlapping generations and population structure on gene-frequency clines.  In Structured Population Models in Marine, Freshwater and Terrestrial Systems.  H Caswell and S Tuljapurkar (eds.) Chapman & Hall.
• Lee, CE.  2002.  A tribute to Professor Bruce W. Frost.  Hydrobiologia.  480:3-4.

• Stillman JH, JK Colbourne, CE Lee, et al. 2008. Recent advances in crustacean genomics. Integrative and Comparative Biology. 48:852-868.

Edited Volumes (Chronological)

• Lee, CE.  2014.  Genetics and genomics of adaptation in response to environmental stress. Evolution (Speciation Section) Volume 68.

• Schierenbeck, KA, CE Lee, RD Holt. 2010. Synthesizing Ecology and Evolution for the Study of Invasive Species. Evolutionary Applications. Volume 3.
  
  
• Lee, CE, GW Gilchrist. 2007. All Stressed Out and Nowhere To Go:  Does Evolvability Limit Adaptation in Invasive Species? Papers from the Symposium at the SSE/ASN/SSB meeting, June 2004.  Genetica. Volume 129.

• Lee, CE, T Mitchell-Olds. 2006. Ecological and Evolutionary Genomics of Populations in Nature.  Special Issue for Molecular Ecology. Volume 15.

• Lee, CE, S Strom, J Yen. 2002. Commemorative Symposium Volume: Progress in Zooplankton Biology: Ecology, Systematics, and Behavior.  Hydrobiologia. Volume 480.

Selected Publications of Graduate Student Publications funded by LEE Grants
(Refer to individual student URLs to view their full list of publications)

• Gulisija D**, and Y Kim.  In Prep.  Evolution of multi-locus adaptive fitness oscillations under heterogeneous cyclic selection. To be submitted to Evolution

• Gulisija D**, Y Kim, and JB Plotkin. 2016. Phenotypic plasticity promotes balanced polymorphism in periodic environments by a genomic storage effect. Genetics, Online Early

• Peyer, SM**, JC Hermanson. In Prep. Inverse characterization of the lift and drag coefficients of zebra and quagga mussels.

• Gulisija D**, and Y Kim.  2015.  Emergence of long-term balanced polymorphism under cyclic selection of spatially variable magnitude. Evolution. 69:979-992.

• Kim, Y, D Gulisija**. 2010. Signatures of genetic hitchhiking under different models of population expansion during colonization of new selective environments. Genetics. 184:571-585.
  
  
• Gulisija, D**, JF Crow. 2007. Inferring purging from pedigree data. Evolution. 61:1043-1051.

• Nice, CC*, NM Anthony*, GW Gelembiuk**, D Ganser and R ffrench-Constant. 2005. The history and geography of diversification within the butterfly genus Lycaeides in North America. Molecular Ecology. 14:1741-1754.

• Chung, M**, GW Gelembiuk**, TJ Givnish. 2004. Population genetics and phylogeography of endangered Oxytropis campestris var. chartacea and relatives: Arctic-alpine disjuncts in eastern North America. Molecular Ecology. 13:3657-3673.